Xiurui Zhu

Xiurui Zhu

NGS生信算法科学家 NGS bioinformatic algorithm scientist @ 字节跳动

About

⚫熟悉多组学医疗大数据挖掘分析,具备根据业务特点研发复杂模型的能力。⚫具备深度学习算法在生信研发中的应用能力。⚫熟练掌握R(含Rcpp)和python语言,了解C++的基本使用方法。⚫熟练掌握nextflow和Galaxy进行生物信息流程的开发和部署。⚫熟练掌握概率统计和模式识别等数学工具并能够进行创新性应用,解决研发中的实际问题。⚫熟练掌握R和python软件包的开发,熟练掌握代码合作开发的工具和技能:git、多版本文档部署(sphinx-multiversion)、代码检查(pre-commit)和CI/CD等。⚫熟练使用linux系统,以及slurm和k8s等分布式高性能计算集群进行大规模生信计算。⚫熟练掌握Cytoscape、igraph、edgebundleR等网络分析展示平台/工具包的使用。⚫Competence in multi-omics biomedical data science; capability in building complex models tailored with project specialties⚫Capability to incorporate deep learning algorithms in bioinformatics R&D⚫Competence in R (including Rcpp) and python; also C++ for some cases requiring computational efficiency⚫Competence in nextflow and Galaxy for the development and deployment of bioinformatic workflows⚫Competence in statics and mathematical tools and conception of their novel applications to solve problems in R&D⚫Competence in package development in R and python; competence in git, multi-version doc generation/deployment (sphix-multiversion), code check (pre-commit) and CI/CD⚫Capability in working on linux system, and distributed high-performance clusters including slurm and k8s⚫Competence in bioinformatic tools including Cytoscape, igraph and edgebundleR

Country

China

City

Shanghai

Industry

Research

Skill

算法, 算法开发, Python, 统计模型, 数据科学, 人工智能, R语言, R 语言, Matlab, 生物信息, 微流控, 数字PCR

Experience

ByteDance

NGS生信算法科学家 NGS bioinformatic algorithm scientist

ByteDance

LinkedIn
2022-1 - 2026-4 · 4 yrs 4 mos

上海市, 中国

上海小荷医学检验实验室有限公司,字节跳动子公司(2026年之前为字节跳动下属部门) 多癌早期筛查及溯源的标志物挖掘,奠定panel研发的基础 多癌早期筛查定制化差异建模研究,提高癌症发现的灵敏度 多癌早期筛查建模流程的开发和系统化模型性能的评价,提高模型构建和迭代的效率和可靠性,客观系统评价建模策略 Shanghai Xiaohe Medical Laboratory Co., Ltd., subcompany of ByteDance Inc. (previously a department of ByteDance until 2026) Biomarker discover for multi-cancer early detection (MCED) Specialized differentiated model development for MCED, improving its sensitivity at high specificity Development and deployment of MCED modeling workflows, improving the efficiency and reliability of model R&D and assessing model strategies in a comprehensive and objective manner

上海韵祥医学科技有限公司

生信算法科学家 Bioinformatic algorithm scientist

上海韵祥医学科技有限公司

2021-1 - 2022-1 · 1 yr 1 mo

中国 上海市

质谱数据处理全流程算法开发和部署 医疗大数据(电子病历+多组学)建模分析 Development and deployment of MS data processing pipeline and novel algorithms Medical big data (EMR and multi-omics) modeling and analysis

Stanford University School of Medicine

Postdoctoral Fellow

Stanford University School of Medicine

LinkedIn
2020-1 - 2020-12 · 1 yr

帕罗奥图, CA

课题1:结直肠癌术后复发早期预警的液态活检多组学建模分析 课题2:代谢组时钟与结直肠癌的早期发现 课题3:青少年近视的前瞻性血清多组学研究 Project 1: multi-omic modeling of liquid biopsy for the early detection of colorectal cancer Project 2: metabolic aging clock and early detection of colorectal cancer Project 3: provisional multi-omic serum study about adolescent myopia

Education

Tsinghua University

Tsinghua University

LinkedIn

生物医学工程

2011 - 2019 · 8 yrs
Tsinghua University

Tsinghua University

LinkedIn

测控技术与仪器

2007 - 2011 · 4 yrs

Xiurui Zhu's Contact Information

Email

******@***.com

Phone

(**) *** ****

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