Wei Zhang
Director, Computational Chemistry @ Kojin Therapeutics
About
Accomplished computational chemist with over 16 years drug discovery experience and demonstrated history of working in pharmaceutical/biotechnology industry. Proficient in project lead and team management. Proven ability to quickly learn, adapt, and execute in new areas. Excellent communication and presentation skills with proven track record of innovation, problem solving, and scientific excellence (over 50 publications and patents).
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United States
Biotechnology
Machine Learning, Cheminformatics, Computational Chemistry, Computer-aided drug design (CADD), Biotechnology, Organic Chemistry, Molecular Biology, Virtual Screening, Drug Design, Oncology, Biochemistry, Lifesciences, NMR, Drug Discovery, Chemistry, Homology Modeling, Protein Chemistry, Pharmacophore Modeling, Molecular Dynamics, Life Sciences
Experience

Director, Computational Chemistry
• Lead molecular modeling studies, including MD simulation/analysis, FEP, cryptic pocket identification, covalent docking/screening, SAR analysis, QM calculation, supporting ferroptosis-based drug discovery projects • Explore/build computational chemistry platform incorporates machine learning/AI-based methods, including generative chemistry and active learning

Director of Computational Chemistry
• Established computational chemistry platform (hardware, software, compound libraries, databases, etc.) supporting drug discovery and development • Provide structural insights and hypothesis to help understand SAR and design/prioritize compound synthesis for lead optimization • Identified novel chemical series through SBVS, and further extended them into new leads for optimization/development • Evaluate the druggability of potential targets, and propose/apply computational strategies, including VS, scaffold hopping, for hit identification • Explore computational methods for their potential applications on discovery projects, including FEP, ML/DL, generative-AI, Covalent Docking, etc. • Train scientists on computational chemistry, cheminformatics, database management methods/strategies, and supervise their applications on drug discovery projects

Director, Computational Chemistry
• Established structure-based drug discovery platform of the department of discovery science • Identified multiple hits with different novel chemical scaffolds by targeting GPCR through molecular modeling and virtual screening • Explore/develop/apply various structure/ligand-based computational strategies, including MD simulation, virtual screening, FEP, etc. and work closely with medicinal chemists, pharmacologists, toxicologists, to facilitate drug discovery and development efforts targeting GPCRs and ion channels • Explore the potential structural mechanisms of specie difference and selectivity among targets and off-targets through molecular modeling and mutagenesis studies. • Manage computational chemistry and chemoinformatic facilities • Work with CROs to solve the cryo-EM structures of target proteins (GPCRs)

Research Investigator
• Apply CADD strategies to discover and develop PROTAC (Proteolysis-Targeting Chimera) protein degraders for a variety of drug targets • Develop computational methods to explore protein-protein interactions and the mechanism of action of PROTACs • Conduct virtual screening to identify novel ligands of target proteins and E3 ligases

Senior Scientist
Cambridge, MA
• Responsible for the development of computational methods, including machine learning and QSAR modeling, to explore drug induced toxic effects and predict different toxicity endpoints. • Work with system biologists, toxicologists, biochemists and cell biologists to explore the potential off-targets of drug candidates. • Manage in vitro safety profiling, explore structural details of potential interactions between screen identified off-targets and drug candidates

Principal investigator/Senior Scientist
• Lead the molecular modeling group and conduct independent drug discovery research. • Apply computational methods, including molecular dynamics simulation, computer-aided drug design and cheminformatics analysis for a variety of drug discovery projects related to cancer, CNS diseases and infectious diseases • Explore and initiate computer-aided drug discovery projects • Work closely with medicinal chemists, biologists and HTS team at different drug discovery stages to identify/optimize hit/lead compounds on various drug targets, including kinases, kinesins, GPCRs, and transporters, etc. • Lead anti-cancer drug discovery projects (identified lead compounds with IC50 values < 10 nM through computational methods) • Develop and apply molecular simulation based computational methods to explore unknown allosteric sites of drug targets • Design and assemble focused/diverse compound libraries • Maintain computational chemistry and chemoinformatic facilities and provide supports to the drug discovery division • Responsible for project report, research proposal, and publication • Train scientists on molecular modeling and cheminformatics applications
Wei Zhang's Contact Information
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