Qiming Yang

Qiming Yang

Senior Research Associate @ NewLimit

About

Ph.D. in Molecular & Cell Biology from UC Berkeley with interdisciplinary research experience in gene regulation, chromatin biology, and imaging-based analysis. Interested in roles across biotech and biopharma, including research & development, bioinformatics, and regulatory affairs. Skilled in wet lab techniques (CRISPR, ChIP, RNAi, protein assays, imaging, lentivirus-mediated transfection) and high-throughput sequencing workflows (ChIP-seq, RNA-seq, Hi-C), complemented by computational analysis (Python, NGS workflows, data visualization, machine learning). Completed Stanford University certifications in supervised and unsupervised learning, recommender systems, and reinforcement learning, enabling predictive modeling and data-driven insights from complex datasets. Strong communicator with experience authoring peer-reviewed publications, mentoring students, and presenting at national conferences. Known for cross-functional collaboration, attention to reproducibility, and translating complex data into actionable insights.

Country

United States

City

Oakland

Industry

Biotechnology

Skill

Scikit-Learn, TensorFlow, Cross-functional Coordination, Python (Programming Language), Next-Generation Sequencing (NGS), Molecular Biology, Communication

Experience

NewLimit

Senior Research Associate

NewLimit

LinkedIn
2025-12 - Present · 10 mos
University of California, Berkeley

Graduate Student Researcher

University of California, Berkeley

LinkedIn
2019-9 - 2025-5 · 5 yrs 9 mos

Berkeley, California, United States

• Led independent research on gene regulation and chromatin remodeling during X-chromosome dosage compensation in C. elegans using genomic, biochemical, and imaging-based approaches • Collaborated with researchers, technicians, and students to co-design experiments, troubleshoot protocols, and align on shared goals • Authored 3 peer-reviewed publications; presented findings through talks and posters at national and regional scientific conferences • Built reproducible analysis pipelines for ChIP-seq, RNA-seq, and Hi-C using Bowtie2, Samtools, DeepTools, and custom Python scripts Technical Experience (Wet Lab Focused) • Designed CRISPR/Cas9 workflows including gRNA design, plasmid construction, microinjection, and mutant screening • Engineered plasmids for gene expression, fluorescent tagging, and RNAi knockdowns • Performed ChIP targeting histone modifications (e.g., H4K20me1) and regulatory proteins (e.g., DPY-27, SEX-1) • Conducted high-resolution imaging via IF and smFISH • Applied western blotting, co-IP, and pull-down assays for protein interaction studies • Purified high-specificity antibodies for use in ChIP, IF, and western blot • Conducted nucleic acid extraction (fragmented/genomic DNA) and quality control using qPCR/RT-qPCR and fragment analysis (TapeStation, FragmentAnalyzer) • Performed lentivirus-mediated transductions for protein expression, including engineered constructs and partial protein domains, in mammalian cell systems for biochemical studies. Technical Experience (Computational Focus) • Translated sequencing and imaging datasets into insights via analysis and visualization workflows • Built automated pipelines for Illumina (RNA-seq, ChIP-seq, Hi-C) and nanopore (DNA methylation, isoform detection) data, applying statistical methods to quantify gene expression, chromatin enrichment, and epigenetic modifications • Developed batch image quantification workflows using Imaris and Python • Experienced with Linux-based environments and Git

University of California, Berkeley

Graduate Student Instructor

University of California, Berkeley

LinkedIn
2022-1 - 2022-5 · 5 mos

Berkeley, California, United States

• Taught upper-division molecular biology and genetics; delivered lectures, mentored undergraduates, and supported students across in-person, hybrid, and remote formats—including during the COVID-19 transition • Substituted for faculty when needed and served as a liaison to manage course logistics, resolve student concerns, and ensure instructional continuity • Designed and graded problem sets, lab exercises, and exams aligned with course objectives; promoted analytical thinking and application of experimental logic

University of California, Berkeley

Graduate Student Instructor

University of California, Berkeley

LinkedIn
2020-9 - 2020-12 · 4 mos

Berkeley, California, United States

• Taught upper-division molecular biology and genetics; delivered lectures, mentored undergraduates, and supported students across in-person, hybrid, and remote formats—including during the COVID-19 transition • Substituted for faculty when needed and served as a liaison to manage course logistics, resolve student concerns, and ensure instructional continuity • Designed and graded problem sets, lab exercises, and exams aligned with course objectives; promoted analytical thinking and application of experimental logic

University of California, Berkeley

Research Staff

University of California, Berkeley

LinkedIn
2017-7 - 2019-8 · 2 yrs 2 mos

Berkeley, California, United States

• Contributed to CRISPR/Cas9 genome editing workflows by designing gRNAs, constructing plasmids, performing microinjections, and screening mutants; presented research via posters at national and regional symposia • Optimized plasmids for gene expression and fluorescent tagging experiments • Performed western blotting, co-immunoprecipitation, and protein purification for protein interaction studies

University of California, Davis

Research Assistant

University of California, Davis

LinkedIn
2015-9 - 2017-6 · 1 yr 10 mos

Davis, California, United States

• Performed forward genetic screens in C. elegans to identify phenotype-altering mutations • Gained foundational lab skills in cloning, media prep, and sterile technique

Education

University of California, Berkeley

University of California, Berkeley

LinkedIn

Cell/Cellular and Molecular Biology

2019 - 2025 · 6 yrs
University of California, Davis

University of California, Davis

LinkedIn

Biochemistry and Molecular Biology

2013 - 2017 · 4 yrs

Qiming Yang's Contact Information

Email

******@***.com

Phone

(**) *** ****

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