Peng Cui
Medical Manager (Bioinformatics and Data Mining)
About
Research Experience and Clinical Projects Multi-omics research projects on precision oncology, including translational medicine, biomarker identification, cancer subtyping, drug target identification and precision medicine etc. • Proteome analysis of pancreatic cancer. Identificiation of two proteins potentially related to the sensitivity of adjuvant chemotherapy for pancreatic cancer. Published in Nature Medicine in 2024 (Co-first author). • Multi-omics analysis of liver cancer organoids. Multi-omics cancer subtyping, drug target identification, and pharmacogenomics exploration for liver cancer organoids. Published in Science Translational Medicine in 2023. • Multi-omics analysis of intrahepatic cholangiocarcinoma (iCCA). Proteogenomic characterization of iCCA for Chinese population, which is of great significance for the precision medicine. Published in Cancer Cell 2021. Clinical trials about liquid biopsy of minimal residual disease (MRD) detection. Responsible for performance verification of MRD detection product (brPROPHET), data analysis of clinical trials, application for Breakthrough Device Designation and support for commercialization. • Recurrence risk prediction for gastrointestinal stromal tumor (GIST) with MRD monitoring (Prof. Gao Zhidong, Peking University People's Hospital). • MRD detection for neoadjuvant chemoradiotherapy of esophageal squamous cell carcinoma (ESCC) (Prof. Zhigang Li, Shanghai Chest Hospital). • MRD detection for neoadjuvant immunotherapy of ESCC (Prof. Lijie Tan, Zhongshan Hospital). Clinical trials about liquid biopsy of cancer early detection. Responsible for performance verification of multi-cancer early detection product (OverC), data analysis of clinical trials, application for Breakthrough Device Designation and support for commercialization. • Review article of circulating cell-free DNA for cancer early detection. Published in The Innovation in 2022. • Early detection of lung cancer by liquid biopsy (Prof. Kezhong Chen, Peking University People's Hospital). Published in eClinicalMedicine in 2024. • Early detection of liver, biliary and pancreatic cancers by liquid biopsy (Prof. Weilin Wang, The Second Affiliated Hospital of Zhejiang University). • Prospective multi-canceR Early-dection and interVENTion study (PREVENT Trial, Prof. Weimin Li, West China Hospital). • OverC is granted for Breakthrough Device Designation for multi-cancer detection blood test by NMPA & FDA.
China
Minhang District
Biotechnology
Bioinformatics, Python, Genomic analysis, Machine Learning, Biology, Teme Work, R, Data Visualization, Biostatistics, Linux, Time Management (GTD)
Experience

Medical Manager (Bioinformatics and Data Mining)
Burning Rock
Shanghai
Participant in investigator-initiated trials (IIT) about MRD detection and multiple cancer early detection. Medical research project design, bioinformatics analysis and communication with KOLs of hospitals. Data mining, manuscript writing, ASCO/ESMO poster submission, and related medical affairs.

Biomedical industry analyst
Write a comprehensive research report about the global clinical development and competition landscapes of PARPi. AI-driven phama industry analysis, such as Schrödinger, Insilico Medicine, Atomwise, BenevolentAI etc. Develop an automated report generator about the competition landscapes of generic drugs. The efficiency of this project increased by 10X times compared with the ordinary workflow. Tools: R, ggplot2, markdown.

Bioinformatics Scientist
Shanghai Center for Bioinformation Technology
Shanghai City, China
Peng Cui's Contact Information
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