Md Nasimuzzaman
Principal Investigator/Staff Scientist for Cell and Gene Therapy @ Thermo Fisher Scientific
About
Cell and gene therapy scientist with extensive experience advancing viral vector technologies and next-generation therapeutics from early discovery through GMP manufacturing and clinical translation. Expertise spans the development of scalable, robust platforms for lentiviral (LV), adeno-associated viral (AAV), and retroviral (RV) vectors, enabling innovative therapies in CAR-T, and broader cell and gene therapy applications. I bring deep experience across the full development lifecycle, including vector design and engineering, upstream and downstream process development, analytical method development and validation, and technology transfer to GMP manufacturing. My work integrates molecular biology, mammalian cell culture (adherent and suspension), cell line development, and viral vector production to build efficient, scalable processes and analytics aligned with regulatory expectations and accelerated timelines. Throughout my career, I have led and supported multiple cell and gene therapy programs, establishing platform technologies, optimizing development workflows, and contributing to regulatory submissions. I have also played a key role in building and scaling state-of-the-art laboratory and process development capabilities, enabling teams to accelerate innovation while maintaining compliance with global regulatory standards. My expertise includes CMC strategy, process characterization, risk assessment, and regulatory engagement, with hands-on experience in manufacturing environments and adherence to global frameworks including ICH, FDA, EMA, and USP guidelines. I collaborate closely with cross-functional stakeholders, external partners, and CDMOs to drive seamless program execution and successful technology transfer. I am driven by the opportunity to advance transformative therapies and contribute to the evolution of cell and gene therapy platforms, and I welcome collaborations aimed at bringing innovative treatments to patients.Core ExpertiseCell & Gene Therapy • Viral Vector Platforms (LV, AAV, RV) • CAR-T & Immuno-Oncology Upstream & Downstream Process Development • Viral Vector Manufacturing Analytical Method Development and Validation (qPCR, ddPCR, ELISA, CE-SDS, Flow Cytometry) • Potency Assay CMC Development • GMP & Regulatory Compliance (ICH, FDA, EMA) Technology Transfer & MSAT • Process Characterization & QbD, Risk Assessment (FMEA) Cross-Functional Leadership • CDMO Collaboration • Program Development
United States
San Diego Metropolitan Area
Biotechnology
Next-Generation Sequencing (NGS), Molecular & Cellular Biology, Design of Experiments (DOE), Processes Development, AAV, Virology, Molecular Biology, Biotechnology, Cell Culture, Gene Therapy, Microbiology, Signal Transduction, Immunofluorescence, Transfection, Molecular Cloning, Tissue Culture, Protein Expression, Cell Signaling, RT-PCR, qPCR
Experience

Principal Investigator/Staff Scientist for Cell and Gene Therapy
San Diego, CA
Accomplishment Successfully owned and executed multiple client projects. Recruited and managed a team of scientists, overseeing process design and optimization using DOE studies. Led development of platforms for scalable LV and AAV manufacturing and analytics for gene and cell therapy drugs in compliance with the cGMP regulations. Effectively managed collaborative projects, vendors, CROs, and CDMOs. Led a cross-functional team in deviation investigation and root cause analysis, and CAPA. AAV Vector Process Development and Manufacturing Optimized cell culture and transfection for AAV vector in HEK293 suspension cell culture. Optimized parameters for AAV purification, including affinity chromatography, AEX for empty-full separation, tangential flow filtration (TFF), and formulation. Implemented Tech transfer the process to GMP facility for manufacturing clinical-grade vectors. LV Vector Process Development and Manufacturing Optimized upstream processes for LV vector in HEK293 in shake flasks and bioreactors. Optimized downstream parameters for LV purification, utilizing AKTA chromatography, tangential flow filtration (TFF), and formulation. Analytical Method Development and Characterization of Viral Vectors Designed and executed experiments to evaluate titers (genomic, infectious, particle), purity, and stability of LV vectors using qPCR, ddPCR, ELISA, and flow cytometry. Assessed transgene expression for gene and cell therapy products. Analyzed experimental data, interpreted results, and generated scientific reports to support manufacturing and regulatory requirements. Cell Therapy & Potency Assay • Led development of autologous CAR-T therapy (CD19) including T-cell activation, transduction, expansion, and functional characterization. • Designed and implemented cell-based potency assays, including tumor killing and cytokine release models. • Advanced understanding of T cell phenotype, function, and engineering strategies.

Faculty Member/ Group Leader, Hematology and Gene Therapy Program
Cincinnati, Ohio
Accomplishments Spearheaded gene therapy preclinical research, driving innovation and scientific advancements. Successfully established an independent research program and laboratory from the ground up, ensuring state-of-the-art facilities and resources. Performed a risk assessment of CQAs, CPPs, and CMAs for AAV drug products, ensuring alignment with QTPP as part of the CMC of drug products. Recruited, trained, and effectively managed a team of scientists, fostering collaborative and high-performing environment. Diligently managed budgets and project timelines across multiple initiatives. Managed external collaboration with CROs and CDMOs. AAV Vector Production and Purification for Gene Therapy Applications Optimized AAV Production - Leveraged Sf9 and Baculovirus alongside HEK293-plasmids systems to optimize AAV production. - Fine-tuned critical process parameters for upstream processes in shake flasks and bioreactors. Streamlined Downstream Processes and Analytics of AAV - Optimized parameters for downstream processes, employing affinity chromatography (AKTA system) and TFF. - Developed and validated analytical methods for characterizing AAV vectors and assessing transgene expression. - Designed and executed experiments to evaluate the potency and titers, purity, and stability of AAV using qPCR, ELISA, CE-SDS, HPLC, and flow cytometry. Developed novel mouse line using CRISPR-Cas9 mediated genome editing Designed guide RNA and donor oligo sequences containing LoxP sites. Led generating novel PAR-4fl/fl mouse in collaboration with the transgenic animal core facility. Generated PAR-1 knockout (KO) cell line using CRISPR-Cas9 mediated genome editing Cloned guide RNA and Cas9 sequences into lentivirus (LV) vector plasmid. Produced LV vector in HEK293T cells by PEI-mediated transfection. Infected the LV vector into HT-29 cell to generate PAR-1 KO single-cell clones.

Research Scientist, Vector Production Core Facility
Cincinnati Metropolitan Area
Accomplishments Served as an SME for upstream, downstream, and analytics of AAV, Adv, LV, and RV. Developed scalable processes in compliance with the cGMP regulations. Manufactured viral vectors for internal and external clients. Mentored junior scientists and troubleshot their experimental challenges. Collaborated as a trusted CRO and CDMO partner with leading GCT biotech companies. Process Development and manufacturing of AAV Vector with HEK293 Cells Optimized upstream processes for AAV vector production via PEI-mediated transfection of HEK293 cells. Enhanced downstream processes for AAV purification using chromatography and TFF. Performed process characterization, and stability studies in support of establishing process understanding and control strategies. Characterized AAV through SDS-PAGE-silver staining, immunoblotting, titrated with qPCR, and analyzed gene expression in transduced cells as part of the potency evaluation. Process Development of AAV Vector Using Insect Cell Culture Developed AAV production utilizing Sf9 and Baculovirus (Bac-to-bac) system. Generated Baculovirus-infected insect cells (BIIC) for AAV production. Advanced upstream processes for AAV in shake flasks and bioreactors. Enhanced downstream processes for AAV purification using affinity chromatography.

Postdoctoral Research Associate, Gene Therapy Program
Memphis, TN, USA
Gene Therapy for Beta-Thalassemia & Sickle Cell Anemia in Mouse Models Conducted preclinical safety and efficacy studies to characterize LV vectors and genemodified cells for IND-enabling studies. Led optimization of vector design and transgene expression and evaluated vector potency in animal models. Alleviated beta-thalassemia in mouse models using LV-globin vector transduction in hematopoietic stem cells and bone marrow transplantation. Analyzed viral vector biodistribution in cells using next-generation sequencing (NGS). Developed robust potency assays, assessed risks, and recommended advanced technologies to enhance gene therapy research. Genotoxicity Analysis of LV Vector with AAV-Mediated Genome Editing Designed, produced, and purified a novel AAV-HMG-GFP vector. Generated recombinant cell clones via AAV vector transduction, homologous recombination, and Cre-loxP-mediated cassette exchange.
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